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This work was developed as part of the ARC Centre for Integrative Legume Research (CILR) NOTE: For these pages to work, your browser has to support both SVG and javascript Most major browsers support SVG by now, EXCEPT Internet Explorer. I would recommend you use Firefox or Opera for viewing these pages as they natively support SVG rendering. However, if you are dead set on using IE, you will need to download a SVG plugin, for example Ssrc_SVG (Note: Adobe no longer supports the Adobe SVG plugin and their plugin does NOT work correctly with this page! A set of SVG-related tests can be performed HERE ) Go here for further information and description of the parameters used on this page or here to download a pdf giving a short overview of the capabilities and a few example analyses
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Arabidopsis_gene_expression_atlas Drosophila_Hox_overexpression Illumina_data_GSE10782 Medicago_expression_atlas blosum62 This data was taken from : Vagner A. Benedito, Ivone Torres-Jerez, Jeremy D. Murray, Andry Andriankaja, Stacy Allen, Klementina Kakar, Maren Wandrey, Jerome Verdier, Helene Zuber, Thomas Ott, Sandra Moreau, Andreas Niebel, Tancred Frickey, Georg Weiller, Ji He , Xinbin Dai, Patrick X. Zhao, Yuhong Tang and Michael K. Udvardi. A gene expression atlas of the model legume Medicago truncatula. The Plant Journal 2008 Volume 55 Issue 3, Pages 504 - 513. It provides Affymetrix expression data for a variety of conditions or tissues in Medicago truncatula. The presented data corresponds to a GCRMA normalization of all *.cel files together.
View Expression Data for Identifiers	OR	Find Clusters of Co-Expressed Genes
Paste Identifiers OR Upload File		Minimum cluster size: ANOVA P-value: (-1=disabled) Correlation cutoff: Foldchange cutoff: (0=disabled) Use negative correlations Invert negative correlations Discard negative correlations
OR: [optional: set graph height: and width:] Search for genes with expression values correlating to the graph below: Click in the graph to change the values. NOTE: values will be re-scaled to between 0(minimum) and 1(maximum) Hold 'SHIFT' and click to set acceptable variances. (0/nothing drawn=disregard variance filter for this condition) Use the checkboxes below to include/exclude conditions from the correlation calculation. # use name average variance 0 Leaf 1 Petiole 2 Stem 3 Veg_Bud 4 Root 5 Root-0d 6 Nod4d 7 Nod10d 8 Nod14d 9 Nodule 10 Flower 11 Pod 12 Seed10d 13 Seed12d 14 Seed16d 15 Seed20d 16 Seed24d 17 Seed36d Filter by correlation coefficient (min 0.8): Discard negative correlations Invert negative correlations Filter by above specified variances

All of the scripts and programs used on this page are also available for download HERE. Simply unzip the archives into a separate directory on your webserver, update the configuration file (editme.variables) to reflect the new location and configuration of the server and you should be ready to go. (NOTE: the web-server needs to be able to run Perl, Php and java and have a temporary directory that apache can write to).