ANU Home | HORUS | Staff Home | Students | RSBS

PathExpress Exploring the metabolic network to interpret post-genomic data

[Home | Stats | Help | Contact]

---

Genome Array	Affymetrix Arabidopsis ATH1 Genome Array (Arabidopsis thaliana)Affymetrix Barley Genome Array (Hordeum vulgare)Affymetrix Bovine Genome Array (Bos taurus)Affymetrix C. elegans Genome Array (Caenorhabditis elegans)Affymetrix Canine Genome 2.0 Array (Canis familiaris)Affymetrix Chicken Genome Array (Gallus gallus)Affymetrix Citrus Genome Array (Citrus sinensis)Affymetrix Cotton Genome Array (Gossypium hirsutum)Affymetrix Drosophila Genome 2.0 Array (Drosophila melanogaster)Affymetrix E. coli Genome 2.0 Array (Escherichia coli)Affymetrix Human Genome U133 Plus 2.0 Array (Homo sapiens)Affymetrix Maize Genome Array (Zea mays)Affymetrix Medicago Genome Array (Medicago truncatula)Affymetrix Medicago Genome Array (Sinorhizobium meliloti)Affymetrix Medicago Genome Array (Medicago sativa)Affymetrix Mouse Genome 430A 2.0 Array (Mus musculus)Affymetrix Plasmodium/Anopheles Genome Array (Homo sapiens)Affymetrix Plasmodium/Anopheles Genome Array (Anopheles gambiae)Affymetrix Plasmodium/Anopheles Genome Array (Plasmodium falciparum)Affymetrix Poplar Genome Array (Populus trichocarpa)Affymetrix Porcine Genome Array (Sus scrofa)Affymetrix Rat Genome 230 2.0 Array (Rattus norvegicus)Affymetrix Rhesus Macaque Genome Array (Rhesus macaque)Affymetrix Rice Genome Array (Oryza sativa)Affymetrix Soybean Genome Array (Glycine max)Affymetrix Sugar Cane Genome Array (Saccharum officinarum)Affymetrix Tomato Genome Array (Lycopersicon esculentum)Affymetrix Vitis vinifera (Grape) Genome Array (Vitis vinifera)Affymetrix Wheat Genome Array (Triticum aestivum)Affymetrix Xenopus laevis Genome 2.0 Array (Xenopus laevis)Affymetrix Xenopus tropicalis Genome Array (Xenopus tropicalis)Affymetrix Yeast Genome 2.0 Array (Schizosaccharomyces pombe)Affymetrix Yeast Genome 2.0 Array (Saccharomyces cerevisiae)Affymetrix Zebrafish Genome Array (Danio rerio)ENZYME (Reference)Maize Oligonucleotide Array Project (Zea mays)
List of Identifiers	Enter or Paste:
	Upload a file: Example for Affymetrix ATH1 Genome Array
Compare to:	Entire pathways Sub-pathways Enzyme Neighbourhoods | Depth 12345678910
P-value threshold:
P-value adjustment:	None False Discovery Rate (FDR) Bonferroni correction
	/

---

When using this tool, please cite:
- Goffard N. & Weiller G. (2007) PathExpress: a web-based tool to identify relevant pathways in gene expression data, Nucleic Acids Research, 35(Web Server Issue), W176-181. [Full Text]
- Goffard N., Frickey T. & Weiller G. (2009) PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways, Nucleic Acids Research [Full Text]

---