GeneBins: a database for classifying gene expression data

Application to plant genome arrays

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Download & Extending MapMan

Genome Arrays		Format
Probe set classification
	Without blastx best matches With blastx best matches	tabular file in MapMan format xml file

Pathway Pictures & XML annotation
0: Overview of KEGG-based Classification	image file	xml file
1.10: Overview of KEGG-based Classification	image file	xml file
1.1: Overview of Carbohydrate metabolism	image file	xml file
1.3: Overview of Lipid metabolism	image file	xml file
1.1.10: Nucleotide sugars metabolism	image file	xml file
1.1.11: Pyruvate metabolism	image file	xml file
1.1.12: Glyoxylate and dicarboxylate metabolism	image file	xml file
1.1.13: Propanoate metabolism	image file	xml file
1.1.14: Butanoate metabolism	image file	xml file
1.1.15: C5-Branched dibasic acid metabolism	image file	xml file
1.1.16: Inositol metabolism	image file	xml file
1.1.17: Inositol phosphate metabolism	image file	xml file
1.1.1: Glycolysis / Gluconeogenesis	image file	xml file
1.1.2: Citrate cycle (TCA cycle)	image file	xml file
1.1.3: Pentose phosphate pathway	image file	xml file
1.1.4: Pentose and glucuronate interconversions	image file	xml file
1.1.5: Fructose and mannose metabolism	image file	xml file
1.1.6: Galactose metabolism	image file	xml file
1.1.7: Ascorbate and aldarate metabolism	image file	xml file
1.1.8: Starch and sucrose metabolism	image file	xml file
1.1.9: Aminosugars metabolism	image file	xml file
1.10.10: Penicillins and cephalosporins biosynthesis	image file	xml file
1.10.12: Streptomycin biosynthesis	image file	xml file
1.10.13: Tetracycline biosynthesis	image file	xml file
1.10.16: Novobiocin biosynthesis	image file	xml file
1.10.1: Terpenoid biosynthesis	image file	xml file
1.10.2: Monoterpenoid biosynthesis	image file	xml file
1.10.3: Limonene and pinene degradation	image file	xml file
1.10.4: Diterpenoid biosynthesis	image file	xml file
1.10.5: Indole and ipecac alkaloid biosynthesis	image file	xml file
1.10.6: Stilbene, coumarine and lignin biosynthesis	image file	xml file
1.10.7: Flavonoid biosynthesis	image file	xml file
1.10.8: Alkaloid biosynthesis I	image file	xml file
1.10.9: Alkaloid biosynthesis II	image file	xml file
1.11.10: Styrene degradation	image file	xml file
1.11.11: 1,4-Dichlorobenzene degradation	image file	xml file
1.11.12: Nitrobenzene degradation	image file	xml file
1.11.13: Ethylbenzene degradation	image file	xml file
1.11.14: Fluorene degradation	image file	xml file
1.11.15: Carbazole degradation	image file	xml file
1.11.16: Benzoate degradation via CoA ligation	image file	xml file
1.11.17: Benzoate degradation via hydroxylation	image file	xml file
1.11.18: Atrazine degradation	image file	xml file
1.11.19: Bisphenol A degradation	image file	xml file
1.11.1: Caprolactam degradation	image file	xml file
1.11.20: 1- and 2-Methylnaphthalene degradation	image file	xml file
1.11.2: Biphenyl degradation	image file	xml file
1.11.3: Toluene and xylene degradation	image file	xml file
1.11.4: gamma-Hexachlorocyclohexane degradation	image file	xml file
1.11.5: 3-Chloroacrylic acid degradation	image file	xml file
1.11.6: 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation	image file	xml file
1.11.7: 2,4-Dichlorobenzoate degradation	image file	xml file
1.11.8: 1,2-Dichloroethane degradation	image file	xml file
1.11.9: Tetrachloroethene degradation	image file	xml file
1.2.1: Oxidative phosphorylation	image file	xml file
1.2.2: ATP synthesis	image file	xml file
1.2.3: Photosynthesis	image file	xml file
1.2.4: Carbon fixation	image file	xml file
1.2.5: Reductive carboxylate cycle (CO2 fixation)	image file	xml file
1.2.6: Methane metabolism	image file	xml file
1.2.7: Nitrogen metabolism	image file	xml file
1.2.8: Sulfur metabolism	image file	xml file
1.3.10: Glycerophospholipid metabolism	image file	xml file
1.3.11: Prostaglandin and leukotriene metabolism	image file	xml file
1.3.1: Fatty acid biosynthesis	image file	xml file
1.3.2: Fatty acid elongation in mitochondria	image file	xml file
1.3.3: Fatty acid metabolism	image file	xml file
1.3.4: Synthesis and degradation of ketone bodies	image file	xml file
1.3.5: Biosynthesis of steroids	image file	xml file
1.3.6: Bile acid biosynthesis	image file	xml file
1.3.7: C21-Steroid hormone metabolism	image file	xml file
1.3.8: Androgen and estrogen metabolism	image file	xml file
1.3.9: Glycerolipid metabolism	image file	xml file
1.4.1: Purine metabolism	image file	xml file
1.4.2: Pyrimidine metabolism	image file	xml file
1.5.10: Arginine and proline metabolism	image file	xml file
1.5.11: Histidine metabolism	image file	xml file
1.5.12: Tyrosine metabolism	image file	xml file
1.5.13: Phenylalanine metabolism	image file	xml file
1.5.14: Tryptophan metabolism	image file	xml file
1.5.15: Phenylalanine, tyrosine and tryptophan biosynthesis	image file	xml file
1.5.16: Urea cycle and metabolism of amino groups	image file	xml file
1.5.1: Glutamate metabolism	image file	xml file
1.5.2: Alanine and aspartate metabolism	image file	xml file
1.5.3: Glycine, serine and threonine metabolism	image file	xml file
1.5.4: Methionine metabolism	image file	xml file
1.5.5: Cysteine metabolism	image file	xml file
1.5.6: Valine, leucine and isoleucine degradation	image file	xml file
1.5.7: Valine, leucine and isoleucine biosynthesis	image file	xml file
1.5.8: Lysine biosynthesis	image file	xml file
1.5.9: Lysine degradation	image file	xml file
1.6.1: beta-Alanine metabolism	image file	xml file
1.6.2: Taurine and hypotaurine metabolism	image file	xml file
1.6.3: Aminophosphonate metabolism	image file	xml file
1.6.4: Selenoamino acid metabolism	image file	xml file
1.6.5: Cyanoamino acid metabolism	image file	xml file
1.6.6: D-Glutamine and D-glutamate metabolism	image file	xml file
1.6.7: D-Arginine and D-ornithine metabolism	image file	xml file
1.6.8: D-Alanine metabolism	image file	xml file
1.6.9: Glutathione metabolism	image file	xml file
1.7.11: Glycosphingolipid metabolism	image file	xml file
1.7.12: Blood group glycolipid biosynthesis-lactoseries	image file	xml file
1.7.13: Blood group glycolipid biosynthesis-neolactoseries	image file	xml file
1.7.14: Globoside metabolism	image file	xml file
1.7.15: Ganglioside biosynthesis	image file	xml file
1.7.1: N-Glycan biosynthesis	image file	xml file
1.7.4: O-Glycan biosynthesis	image file	xml file
1.7.5: Chondroitin / Heparan sulfate biosynthesis	image file	xml file
1.7.7: Glycosaminoglycan degradation	image file	xml file
1.7.8: Lipopolysaccharide biosynthesis	image file	xml file
1.7.9: Peptidoglycan biosynthesis	image file	xml file
1.8.3: Biosynthesis of ansamycins	image file	xml file
1.8.4: Biosynthesis of type II polyketide backbone	image file	xml file
1.8.5: Biosynthesis of type II polyketide products	image file	xml file
1.8.6: Polyketide sugar unit biosynthesis	image file	xml file
1.8.8: Biosynthesis of siderophore group nonribosomal peptides	image file	xml file
1.8.9: Biosynthesis of vancomycin group antibiotics	image file	xml file
1.9.10: Porphyrin and chlorophyll metabolism	image file	xml file
1.9.11: Ubiquinone biosynthesis	image file	xml file
1.9.1: Thiamine metabolism	image file	xml file
1.9.2: Riboflavin metabolism	image file	xml file
1.9.3: Vitamin B6 metabolism	image file	xml file
1.9.4: Nicotinate and nicotinamide metabolism	image file	xml file
1.9.5: Pantothenate and CoA biosynthesis	image file	xml file
1.9.6: Biotin metabolism	image file	xml file
1.9.7: Folate biosynthesis	image file	xml file
1.9.8: One carbon pool by folate	image file	xml file
1.9.9: Retinol metabolism	image file	xml file
2.2.3: Aminoacyl-tRNA synthetases	image file	xml file
2.3.7: Ubiquitin mediated proteolysis	image file	xml file
3.2.10: Phosphatidylinositol signaling system	image file	xml file
3.2.11: Insulin signaling pathway	image file	xml file
3.2.12: Adipocytokine signaling pathway	image file	xml file
3.2.13: T cell receptor signaling pathway	image file	xml file
3.2.14: B cell receptor signaling pathway	image file	xml file
3.2.3: Wnt signaling pathway	image file	xml file
3.2.4: Notch signaling pathway	image file	xml file
3.2.5: Hedgehog signaling pathway	image file	xml file
3.2.6: TGF-beta signaling pathway	image file	xml file
3.2.7: Toll-like receptor signaling pathway	image file	xml file
3.2.8: Jak-STAT signaling pathway	image file	xml file
3.2.9: Calcium signaling pathway	image file	xml file
3.3.2: Neuroactive ligand-receptor interaction	image file	xml file
3.3.6: Cytokine-cytokine receptor interaction	image file	xml file
3.3.7: ECM-receptor interaction	image file	xml file
3.3.8: Cell adhesion molecules (CAMs)	image file	xml file
4.1.1: Bacterial chemotaxis	image file	xml file
4.1.3: Regulation of actin cytoskeleton	image file	xml file
4.2.5: Apoptosis	image file	xml file
4.3.1: Focal adhesion	image file	xml file
4.3.2: Adherens junction	image file	xml file
4.3.3: Tight junction	image file	xml file
4.3.4: Gap junction	image file	xml file
4.4.1: Complement and coagulation cascades	image file	xml file
4.5.2: Axon guidance	image file	xml file

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