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 Dr. Tancred Frickey |
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| Current Research |
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| Analysis of microarray and proteomics data generated by the CILR |
| Programs & Utilities |
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| AffyTrees |
| CLANS |
| PhyloGenie |
| AlnEdit |
| BlatView |
| JTreeView |
| HMMAccel |
| MClip |
| SSalign |
| Academic Qualifications |
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| Biology Diploma, Constance University, Germany (2001) |
| Biology Ph.D., Tuebingen University, Germany (2005) |
| Relevant Employment History |
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| 2001-2005 Max-Planck-Institute for Developmental Biology Tuebingen, Ph.D Student. |
| 2005-present Australian National University Canberra, Postdoctoral Fellow |
| Awards |
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| Elisabeth-Gateff Ph.D. Award of the German Genetics Society (GFG) (2005) |
| Selected Publications |
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| Wen J., Frickey T. and Weiller G. (2008) Computational prediction of candidate miRNAs and their targets from Medicago truncatula non-protein-coding transcripts. In Silico Biology. 8: 0024. |
| Benedito VA., Torres-Jerez I., Murray JD., Andriankaja A., Allen S., Kakar K., Wandrey M., Verdier J., Zuber H., Ott T., Moreau S., Niebel A., Frickey T., Weiller G., He J., Dai X., Zhao PX., Tang Y. and Udvardi MK. (2008) A gene expression atlas of the model legume Medicago truncatula. Plant J. DOI: 10.1111/j.1365-313X.2008.03519.x |
| Leon-Galvan F., Carbajal N., Frickey T. and Santos L. (2008) Microbial identification of the Nichupte-Bojorquez coastal lagoon in Cancun, Mexico. Aquatic Ecology. DOI:10.1007/s10452-008-9171-1 |
| Karsten Oelkers, Nicolas Goffard, Georg F Weiller, Peter M Gresshoff, Ulrike Mathesius and Tancred Frickey (2008) Bioinformatic analysis of the CLE signaling peptide family. BMC Biology. 8(1):1 |
| Frickey T. and Weiller G. (2008) AffyTrees: facilitating comparative analysis of Affymetrix plant microarray chips. Plant Phys. 146(2):377-386. |
| Frickey T. and Weiller G. (2007) Analyzing microarray data using CLANS. Bioinformatics. 23(9):1170-1171. |
| Frickey T. and Weiller G. (2007) Mclip: motif detection based on cliques of gapped local profile-to-profile alignments. Bioinformatics. 23(4):502-503. |
| Ammelburg M., Frickey T. and Lupas A.N. (2006) Classification of AAA+ proteins. J. Struct. Biol., 156:2-11. |
| Proikas-Cezanne T., Gaugel A., Frickey T. and Nordheim A. (2006) Rab14 is part of the clathrin-coated TGN microdomain. FEBS Letters. 580:5241-5246. |
| Frickey T. (2006) Biologisch relevante Klassifizierung von Proteinsequenzen: ein bioinformatischer Ansatz. Biospektrum 1:70-71. |
| Coles M., Djuranovic S., Soeding J., Frickey T., Koretke K., Truffault V., Martin J., Lupas AN., (2005). AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels. Structure (Camb),13(6):919-28. |
| Proikas-Cezanne T., Waddell S., Gaugel A., Frickey T., Lupas A., Nordheim A., (2004). WIPI-1-alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy. Oncogene, 23(58):9314-25. |
| Frickey, T., Lupas, A.N., (2004) CLANS: A Java application for visualizing protein families based on pairwise similarity. Bioinformatics, 20(18): 3702-4. |
| Santos, L., Frickey, T., Peters, J., Baumeister, W., Lupas, A.N., Zwickl, P. (2004) Thermoplasma acidophilum TAA43 is an archaeal member of the eukaryotic meiotic branch of AAA ATPases. Biol. Chem. 385(11):1105-11. |
| Frickey, T., Lupas, A.N., (2004) PhyloGenie: automated phylome generation and analysis. Nucleic Acids Res., 32(17): 5231-8. |
| Frickey, T., Lupas, A.N., (2004) Phylogenetic analysis of AAA proteins. J. Struct. Biol. 146(1-2): 2-10. |
| Rabus, R., Ruepp, A., Frickey, T., Rattei, T., Fartmann, B., Starck, M., Bauer, M., Zibat, A., Lombardot, T., Becker, I., Amann, J., Gellner, K., Teeling, H., Leuschner, W.D., Gloeckner, F.-O., Lupas, A.N., Amann, R., Klenk, H.-P. (2004) The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments. Environ. Microbiol. 6(9): 887-902. |
| Taylor, J.S., Braasch, I., Frickey, T., Meyer, A., Vand de Peer, Y., (2003) Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res. 13(3): 382-90. |
| Hrbek, T., Kucuk, F., Frickey, T., Stolting, K.N., Wildekamp, R.H., Meyer, A.(2002) Molecular phylogeny and historical biogeography of the Aphanius (Pisces, Cyprinodontiformes) species complex of central Anatolia, Turkey. Mol. Phylogenet. Evol. 25(1):125-37. |
| Van de Peer, Y., Frickey, T., Taylor, J., Meyer, A. (2002) Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes. Gene 295(2):205-11. |
| Obornik, M., Van de Peer, Y., Hypsa, V., Frickey, T., Slapeta, J.R., Meyer, A., Lukes, J. (2002) Phylogenetic analyses suggest lateral gene transfer from the mitochondrion to the apicoplast. Gene 285(1-2):109-18. |
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